Exploring Raj’s Samples

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1 Transcriptional profile PCA and differential gene expression (DGA)

1.1 RNA-seq

RNA was isolated and sequenced from the various cell types.

1.2 Sample summary

1.2.1 Using scater normalization

1.3 DEseq2 PCA

1.4 DEseq2 PCA (dupRadar)

1.5 PCA GSEA

1.5.1 PC1 GSEA

1.5.2 Genes Driving PC1

1.5.3 PC2 GSEA

1.5.4 Genes Driving PC2

1.6 combinations

1.7 Differential Gene Expression

1.7.1 1.

1.7.2 2.

1.7.3 3.

1.7.4 4.

1.7.5 5.

1.7.6 6.

1.7.7 7.

1.7.8 8.

1.7.9 9.

1.7.10 10.

1.7.11 11.

1.7.12 12.

1.7.13 13.

1.7.14 14.

1.7.15 15.